PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_00728
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family MYB
Protein Properties Length: 234aa    MW: 27497.8 Da    PI: 7.0612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_00728genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.6e-161764148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT++Ed+ll++ v+++G g+W++++r  g++R++k+ ++rw +yl
       PEQU_00728 17 KGPWTPQEDQLLIEHVRLHGEGRWNSVSRLTGLKRSGKSSRLRWVNYL 64
                     79********************************************97 PP

2Myb_DNA-binding53.65.1e-1770114147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
       PEQU_00728  70 RGKITPHEENIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 114
                      8999******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.0181264IPR017930Myb domain
SuperFamilySSF466897.42E-2815111IPR009057Homeodomain-like
SMARTSM007173.9E-141666IPR001005SANT/Myb domain
PfamPF002492.2E-151764IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-201871IPR009057Homeodomain-like
CDDcd001671.13E-91964No hitNo description
PROSITE profilePS5129424.2265119IPR017930Myb domain
SMARTSM007171.2E-1569117IPR001005SANT/Myb domain
PfamPF002492.0E-1470114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2472118IPR009057Homeodomain-like
CDDcd001674.20E-1074115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEGKYYGWGS VTDGWRKGPW TPQEDQLLIE HVRLHGEGRW NSVSRLTGLK RSGKSSRLRW  60
VNYLRPDLKR GKITPHEENI ILELHARWGN RWSTIARSLP GRTDNEIKNY WRTHFKKSTK  120
NVDKARARYL KLQQEQRQLQ QQQQQQYLIS QNNIIKEEIT SQAQEAIMAQ EMQEMAFMCG  180
NMPLMFNDGG FVGESTTNSE DRSSEEEACY DTWESLWNLD DMGFDMANEA LTLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-261711927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010918950.13e-91PREDICTED: myb-related protein 340
TrEMBLM0RWQ32e-82M0RWQ3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P03450_0017e-82(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-66myb domain protein 305